Ogurtsov, Aleksey Y.: search on Z-Library

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1

A graphical user interface for RAId, a knowledge integrated proteomics analysis suite with accurate statistics

Joyce, Brendan, Lee, Danny, Rubio, Alex, Ogurtsov, Aleksey, Alves, Gelio, Yu, Yi-Kuo

Journal:

BMC Research Notes

Year:

2018

Language:

english

File:

PDF, 4.34 MB

english, 2018

2

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome

Olga V Matveeva, Brian T Foley, Vladimir A Nemtsov, Raymond F Gesteland, Senya Matsufuji, John F Atkins, Aleksey Y Ogurtsov, Svetlana A Shabalina

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 269 KB

english, 2004

3

Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry

Alves, Gelio, Wang, Guanghui, Ogurtsov, Aleksey Y., Drake, Steven K., Gucek, Marjan, Sacks, David B., Yu, Yi-Kuo

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

4

Selective constraint in intergenic regions of human and mouse genomes

Svetlana A Shabalina, Aleksey Yu Ogurtsov, Vasily A Kondrashov, Alexey S Kondrashov

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 240 KB

english, 2001

5

Molecular Isotopic Distribution Analysis (MIDAs) with Adjustable Mass Accuracy

Alves, Gelio, Ogurtsov, Aleksey Y., Yu, Yi-Kuo

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2014

Language:

english

File:

PDF, 549 KB

english, 2014

6

Role of mRNA structure in the control of protein folding

Faure, Guilhem, Ogurtsov, Aleksey Y., Shabalina, Svetlana A., Koonin, Eugene V.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.25 MB

english, 2016

7

Identification of Microorganisms by High Resolution Tandem Mass Spectrometry with Accurate Statistical Significance

Alves, Gelio, Wang, Guanghui, Ogurtsov, Aleksey Y., Drake, Steven K., Gucek, Marjan, Suffredini, Anthony F., Sacks, David B., Yu, Yi-Kuo

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2016

Language:

english

File:

PDF, 3.78 MB

english, 2016

8

Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

Fyodor A. Kondrashov, Aleksey Y. Ogurtsov, Alexey S. Kondrashov

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 446 KB

english, 2006

9

Computational models with thermodynamic and composition features improve siRNA design

Svetlana A Shabalina, Alexey N Spiridonov, Aleksey Y Ogurtsov

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 806 KB

english, 2006

10

RAId_DbS: Peptide Identification using Database Searches with Realistic Statistics

Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu

Journal:

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

11

Calibrating E-values for MS2database search methods

Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu

Journal:

Year:

2007

Language:

english

File:

PDF, 893 KB

english, 2007

12

Optimized models for design of efficient miR30-based shRNAs

Matveeva, Olga V., Nazipova, Nafisa N., Ogurtsov, Aleksey Y., Shabalina, Svetlana A.

Journal:

Frontiers in Genetics

Year:

2012

Language:

english

File:

PDF, 1.74 MB

english, 2012

13

Expression Patterns of Protein Kinases Correlate with Gene Architecture and Evolutionary Rates

Ogurtsov, Aleksey Y., Mariño-Ramírez, Leonardo, Johnson, Gibbes R., Landsman, David, Shabalina, Svetlana A., Spiridonov, Nikolay A., Hannenhalli, Sridhar

Journal:

Year:

2008

Language:

english

File:

PDF, 843 KB

english, 2008

14

Adaptation of mRNA structure to control protein folding

Faure, Guilhem, Ogurtsov, Aleksey Y., Shabalina, Svetlana A., Koonin, Eugene V.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.88 MB

english, 2017

15

Evolution of alternative and constitutive regions of mammalian 5'UTRs

Alissa M Resch, Aleksey Y Ogurtsov, Igor B Rogozin, Svetlana A Shabalina, Eugene V Koonin

Journal:

Year:

2009

Language:

english

File:

PDF, 455 KB

english, 2009

16

RAId: Knowledge Integrated Proteomics Web Service with Accurate Statistical Significance Assignment

Ogurtsov, Aleksey Y., Alves, Gelio, Yu, Yi‐Kuo

Journal:

Year:

2019

Language:

english

File:

PDF, 165 KB

english, 2019

17

Positive selection at sites of multiple amino acid replacements since rat–mouse divergence

Bazykin, Georgii A., Kondrashov, Fyodor A., Ogurtsov, Aleksey Y., Sunyaev, Shamil, Kondrashov, Alexey S.

Journal:

Year:

2004

Language:

english

File:

PDF, 148 KB

english, 2004

18

Assigning statistical significance to proteotypic peptides via database searches

Gelio Alves, Aleksey Y. Ogurtsov, Yi-Kuo Yu

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

19

Optimization of signal-to-noise ratio for efficient microarray probe design

Matveeva, Olga V., Nechipurenko, Yury D., Riabenko, Evgeniy, Ragan, Chikako, Nazipova, Nafisa N., Ogurtsov, Aleksey Y., Shabalina, Svetlana A.

Journal:

Year:

2016

Language:

english

File:

PDF, 707 KB

english, 2016

20

RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration

Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu

Journal:

Year:

2008

Language:

english

File:

PDF, 581 KB

english, 2008

21

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing

Kim, Jung-Hyun, Dilthey, Alexander T, Nagaraja, Ramaiah, Lee, Hee-Sheung, Koren, Sergey, Dudekula, Dawood, Wood III, William H, Piao, Yulan, Ogurtsov, Aleksey Y, Utani, Koichi, Noskov, Vladimir N, Sha

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

22

Detection of co-eluted peptides using database search methods

Gelio Alves, Aleksey Y Ogurtsov, Siwei Kwok, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu

Journal:

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

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